Jun Ni's Publications
Summary: 33 edited or co-edited books or proceedings; 71 peer-reviewed conference papers; 31 journal papers; 356 SCI journal citations to Jun Ni’s first-author journal papers (resources: ISI Web of Science, Oct., 2009).
Peer-reviewed Journal Papers (24 papers)
[1] Jun Ni and Christoph Beckermann, “A Volume Averaged Two-Phase Model for Transport Phenomena during Solidification,” Metall. Trans. B, Vol. 22B, pp. 349-361, June, 1991 [SCI-ISI: Web of Science: Journal Citation: 228 ] (PDF)
[2] Jun Ni and Christoph Beckermann, “Natural Convection in a Vertical Enclosure Filled with Anisotropic Porous Media,” ASME Journal of Heat Transfer, Vol. 113, pp. 1033-1037, 1991 [SCI-ISI: Web of Science: Journal Citation: 27] (PDF)
[3] Fari Alipour, and Jun Ni, “Numerical Simulation of Laryngeal Flow,” Journal of Acoustic Soc. of American, Vol. 92, No. 4, Part II, pp. 2391, 1992
[4] Jun Ni and Christoph Beckermann, “Modeling of Globulitic Alloy Solidification with Melt Convection,” J. of Materials Processing & Manufacturing Science, Vol. 2, No. 2, pp. 217-231, 1993
[5] Jun Ni and Christoph Beckermann, “Two-Phase Model and its Numerical Simulation of Metal Alloy Solidification," J. of Acta Metallurgica Sinica, Vol. 30, No 9, 1994
[6] Jun Ni and Frank P. Incropera, “Extension of the Continuum Model for Transport Phenomena Occurring during Metal Alloy Solidification, Part II: Microscopic Considerations,” Int. J. of Heat and Mass Transfer, Vol. 38, No. 7, pp. 1285-1296, 1995. [SCI-ISI: Web of Science, Journal of Citation: 31 ] (PDF)
[7] Jun Ni and Frank P. Incropera, “Extension of the Continuum Model for Transport Phenomena Occurring during Metal Alloy Solidification, Part I: The Conservation Equations,” Int. J. of Heat and Mass Transfer, Vol. 38, No. 7, pp. 1271-1284, 1995. [SCI-ISI: Web of Science, Journal Citation: 44 ] (PDF)
[8] Kent Lee, Jun Ni, Tom Halverson, Eric Van Wyk, and Judith Brown, “Is MVE the Right Environment for Your Visualization Application,” Computer Graphics, Vol. 29, No. 2, May 1995, pp. 49-51 (PDF)
[9] Christoph Beckermann and Jun Ni, “Simulations of Sedimentation in Globulitic Alloy Solidification,” Int. Communication Journal of Heat and Mass Transfer, Vol. 23, No. 3, pp.315-324, 1996 [SCI-ISI: Web of Science, Citation: 3 ] (PDF)
[10] George W. Bergantz and Jun Ni, “A Numerical study of sedimentation by dripping instabilities in viscous fluids,” International Journal of Multiphase Flow, Vol. 25, pp. 307-320, 1999 [SCI-ISI: Web of Science, Citation: 19] (PDF)
[11] Youping Deng, Jun Ni and Chaoyang Zhang, “Development of computations in bioscience and bioinformatics and its application,” BMC Bioinformatics, 2006, 7 (Suppl 4): S19 (PDF)
[12] Longde Yin, Chun-Hsi Huang, Jun Ni, “Clustering of Gene Expression Data: Performance and Similarity Analysis,” BMC Bioinformatics, 2006, 7 (Suppl 4): S1 (PDF)
[13] Lili Huang, Ge Wang, S. Kao, and Jun Ni, “VoluMeasureTM: A Portable Java program for Stereological Volume Measurement,” Radiology, November 2002, Vol. 225 (P)
[14] Xiang Li, Jun Ni and Ge Wang, “Parallel Iterative Cone Beam CT Image Reconstruction on a PC Cluster,” Journal of X-Ray Science and Technology, 13(2005) 1-10.
[15] Junjun Deng, Hengyong Yu, Jun Ni, Shiyi Zhao, Lihe Wang, and Ge Wang, “A Parallel Katsevich algorithm for 3-D CT Image Reconstruction,” Journal of Supercomputing, Volume 38, Number 1/October, 2006, pp. 35–47, Springer/Kluwer Academic Publisher [SCI-ISI: Web of Science, Citation: 4] (PDF)
[16] Jun Ni, Xiang Li, Ge Wang, “Parallel Computing Techniques for Computed Tomography,” Current Medical Imaging Reviews, 2006, Vol. 2, No. 4, pp. 1-10, Bentham Science Publishers (PDF)
[17] Bo Qiang, Jun Ni, and Laurie Fajardo, “Parallel Monte Carlo Algorithm for Simulation of Photon Migration inside Biological Tissues,” RSNA|07, Chicago, USA, Scientific Paper, Nov. 25-30, 2007, SSQ16-02, pp. 596, 2007
[18] Shaoping Xiao, Shaowen Wang, Jun Ni, Ransom Briggs, Maciej Rysz, “Reliability Analysis of Carbon Nanotubes Using Molecular Dynamics with the Aid of Grid Computing,” Journal of Computational and Theoretical Nanosciences, Vol. 5, pp. 528-534, 2008 (PDF)
[19] Shaoping Xiao, Jun Ni, Shaowen Wang, “The Bridging Domain Multiscale Method and its High Performance Computing Implementation,” Journal of Computational and Theoretical Nanosciences, Vol. 5, No. 7, pp. 1220-1229, 2008 (PDF)
[20] Fei Gu, Hang Chen, Jun Ni, and Zhengge Huang, “Protein structural class prediction based on an improved statistical strategy,” BMC Bioinformatics 2008, 9(Suppl 6):S10 (PDF)
[21] Hiroyuki Mishima, Andrew C. Lidral, and Jun Ni, “Application of the Linux-based Cluster for Exhaustive Window Haplotype Analysis Computation using FBAT and Unphased Programs,” BMC Bioinformatics 2008, 9(Suppl 6):S5, 2008 (PDF)
[22] Guoqing Lu, Jun Ni, Tom Casavant, and Brian Athey, “Highlighting computations in bioscience and bioinformatics: review of the Symposium of Computations in Bioinformatics and Bioscience,” BMC Bioinformatics 2008, 9(Suppl 6):S1, 2008 (PDF)
[23] Ying Chen, Chun Zhang, Jia-dong Wang, Zhu-lin Gong, Jun Ni, Lu Zhang, A Data Model for Knowledge-Based Image-Computer-Aided Surgery (ICAS) Systems, Shanghai Jiaotong University Journal, SJTU Press 2008, 13(5): 595-599 (PDF)
[24] Yanbo Li, Jing Zhang, Jun Ni, “Curvature Extraction in Soft Tissue Self-Collision Detection for Virtual Surgery,” Harbin Engineering University Journal (in Press)
[25] Junjun Deng, Hengyong Yu, Jun Ni, Lihe Wang, and Ge Wang, “Parallelism of Iterative CT Algorithm based on Local Reconstruction,” Journal of Supercomputing, Springer, Vol. 48, pp. 1-14, 2009 (PDF)
[26] Jun Ni, Junjun Deng, Hengyong Yu, Tao He, Ge Wang, “Analytical Model for Performance Evaluation of Parallel Katsevich Algorithm for 3-D CT Image Reconstruction,” Int. Journal on Computational Science and Engineering, Inderscience Publisher (accepted)
[27] Wang Yuanbiao, Jun Ni, Zhiping Xu, “Effects of Spectral Radius on Echo-State of Neural Network Training,” (submitted)
[28] Yuanbiao Wang, Zhi-ping Xu, Jun Ni, ‘Optimization of Weight Matrix in Echo State Network for Training in Recurrent Neuron Network (RNN),’ (submitted)
[29] Xiupeng Wei, Shaoping Xiao, Jun Ni, “Studies of ice melting using molecular dynamics," Molecular Simulation,” Journal of Experimental NanoScience (accepted)
[30] Zhang Lifeng, Chen Ying, Zhang Lu, Jun Ni, Laurie Fajado, Detection of Pleomorphic Distributed Clustered Calcifications in Digital Mammograms (submitted)
[31] Jun Ni, Review of Parallel Computing in Medical Imaging (submitted)
Peer-reviewed Conference Proceedings (60)
1989-1995
[1] Ni, Jun, and Beckermann, C., "Natural Convection in a Vertical Enclosure Filled with Anisotropic Porous Media," in Natural Circulation in Single-Phase and Two-Phase Flow, ed. F. B. Cheung and M. S. El-Genk, ASME, HTD-Vol. 115, New York, pp. 15-21, 1989
[2] Ni, Jun, Feller, R. J., and Beckermann, C., "A Two-Phase Model for Transport Phenomena during Solidification," in Modeling of Casting, Welding and Advanced Solidification Processes -V, ed. M. Rappaz, M. R. Ozgu and K. W. Mahin, TMS, Warrendale, TSM Publishing, Pennsylvania, pp. 675-682, 1990
[3] Beckermann, C. and Ni, Jun, "Micro-Macroscopic Modeling of Transport Phenomena during Solidification," XXII ICHMT International Symposium on Manufacturing and Materials Processing, Dubrovnik, Yugoslavia, Aug. 1990
[4] Ni, Jun and Beckermann, C., "A Two-Phase Model for Mass, Momentum, Heat and Species Transport during Solidification," in Transport Phenomena in Material Processing, ed. M. Charmichi, M. K. Chyu, Y. Joshi, and S. M. Walsh, ASME Publication, New York, HTD-Vol. 132, pp. 45-56, 1990
[5] Alipour, F. and Ni, Jun, "Numerical Simulation of Laryngeal Flow," presented at the 12th Meeting of the Acoustical Society of America, October 31 to November 4, 1992, New Orleans, LA; also in Journal of Acoustic Soc. of American, Vol. 92, No 4, Part II, pp. 2391, 1992
[6] Ahuja, S., Ni, Jun, and Beckermann, C., "Solid/liquid Interfacial Drag in Equiaxed Solidification," TMS Annual Meeting, San Diego, California, March 1-5, 1992
[7] Beckermann, C. and Jun Ni, "Modeling of Sedimentation in Equiaxed Alloys Solidification," in TMS/ASM Materials Week 93 (or 93's TMS Fall Annual Meeting), October 18-21, 1993, Pittsburgh, Pennsylvania
[8] Ni, Jun, Knaack, J., and Fan, C., "Geometrical Animation and Numerical Visualization for CAD and CFD of Hydraulic Coupling," in New Advances in Computer Aid Design and Computer Graphics, Vol. 1, International Academic Publishers, pp. 855-860; also presented at the 3rd International Conference Proceedings of CAD/Graphics'93, Beijing, China, Aug. 1993
[9] Ni, J. and Alipour, F., "Animation and Numerical Simulation of Laryngeal Airflow," in New Advances in Computer Aid Design and Computer Graphics, Vol. 1, International Academic Publishers, pp. 849-854, 1993; also presented at the 3rd International Conference Proceedings of CAD/Graphics'93, Beijing, China, Aug. 1993
[10] Ni, Jun, Beckermann, C., and Smith, T.F., "Effect of an Electromagnetic Field on Natural Convection in Porous Media," in Fundamentals of Heat Transfer in Electromagnetic, Electrostatic, and Acoustic Fields, eds., Y. Bayazitoglu and V.S. Arpaci, HTD-Vol. 248, pp.23-33, ASME Publication, New York, NY, 1993; also presented at the 29th National Heat Transfer Conference, Atlanta, Georgia, Aug. 8-11, 1993
[11] Beckermann, C. and Ni, Jun, "Modeling of Equiaxed Solidification with Convection," in Proceedings of First International Conference on Transport Phenomena Processing, ed. S. I. Guceri, Technomic Publishing Company, Inc., Lancaster, Pennsylvania, pp. 308-317, 1993
[12] George W. Bergantz, Jim Mancino, and Jun Ni, "Two-phase of Igneous and Metamorphic Transport Processes: Linking Kinetics, Crystal Growth, Convection and Sedimentation," EOS, Transactions, American Geophysic Union, Vol. 76, No. 46, Nov. 7 Supplement, 1995; presented at 1995 Fall Meeting of American Geophysic Union, San Francisco, CA, Dec. 11-15, 1995
2000
[13] Jun Ni: “Science and Engineering Online Solution Library for Education,” WebNet2000, pp. 972-973, Charles B. Owen (Eds.): Proceedings of WebNet 2000 - World Conference on the WWW and Internet, San Antonio, Texas, USA, October 30 - November 4, 2000. AACE 2000, ISBN 1-880094-40-1, 2000 (PDF)
2002
[14] Lili Huang, Ge Wang, S. Kao, and Jun Ni, “VoluMeasureTM: A Portable Java program for Stereological Volume Measurement, “Education Exhibition, Radiological Society of North American Scientific Assembly and Annual Meeting, Chicago, and December 1-6. 2002 (PDF)
[15] Shaowen Wang, Boyd Knosp, Jun Ni, Alexi Mestvirishvili, Yasar Onel, Ahmet Sedat Ayan, Jonathan Olson, and Ugur Akgun, “Building Collaborative Environments for Grid-based Large Hadron Collider Analysis - Efforts at the University of Iowa,” in Workshop on Large Hadron Collider (LHC) Global Science – Developing Proposals and Plans for Building the Environment for a Global Collaborative Science Community, Lawrence Berkeley National Laboratory, Berkeley, CA, USA, November 12-13, 2002 (PDF)
2003[16] Shaowen Wang, A. Padmanabham, Y. Liu, R. Briggs, Jun Ni, Tao He, Boyd Knosp, and Y. Onel, “A Multi-agent System Architecture for End-user Grid Monitoring Using Geographic information Systems (MAGGIS): Architecture and Implementation,” proceeding of 2nd International Workshop of Grid and Cooperative Computing (GCC2003), Shanghai, China, 2003, Lecture Note in Computer Science, Vol. 3032, pp.536 – 543, ISBN: 3-540-21988-9, Springer-Verlag Heidelberg, 2004 (PDF)
[17] Tao He, Jun Ni, Shaowen Wang, and Boyd Knosp, "Java Grid Computing Library --- A Distributed Programming Solution for Grid Computing," proceeding of 2nd International Workshop of Grid and Cooperative Computing (GCC2003), Shanghai, China, 2003 (PDF)[22] Jun Ni, Tao He, Lili Huang, Shaowen Wang, Boyd Knosp, and Ching-long Lin, “Distributed Computation for Diffusion Problem in a P2P-Enhanced Computing System,” proceeding of 2nd International Workshop of Grid and Cooperative Computing (GCC2003), Shanghai, China, 2003; Lecture Note in Computer Science, Volume 3032, pp.428 – 435, 2004, ISBN: 3-540-21988-9, Springer-Verlag Heidelberg, 2004 (PDF)2004
[18] Xiang Li, Jun Ni, Ge Wang, “Parallel Iterative CT Image Reconstruction on a Linux Cluster of Legacy Computers,” to High Performance Computing and Applications (HPCA2004), Shanghai, China, August 8-10, 2004 (PDF)
[19] Xiang Li, Tao He, Jun Ni, Ge Wang, “P2P-enhanced Distributed Parallel Iterative Cone Beam CT Image Reconstruction,” Radiology Society of North America, the 90th Assembly and Annual Meeting (RSNA2004), Nov.28-Dec.3, 2004, McCormick Place, Chicago, Illinois, USA (PDF)
[20] Jun Ni, Tao He, Xiang Li, Shaowen Wang, Ge Wang, “EM Medical Image Reconstruction in a Peer-to-Peer Systems,” in the proceeding of the Third International Grid and Cooperative Computing (GCC2004), Wuhan, China, Oct. 21-24, Lecture Note in Computer Science (LNCS), Vol. 3251, pp. 495-501, Springer-Verlag Heidelberg, Germany, 2004 (PDF)
[21] Xiang Li, Tao He, Shaowen Wang, Ge Wang, and Jun Ni, “P2P-enhanced Distributed Computing in Medical Image EM Reconstruction,”in the proceeding of the 2004 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'04), Las Vegas, Nevada, USA, June 21-24, 2004, Hamid R. Arabnia and Jun Ni (Eds.), pp. 822-828, Vol. II, ISBN: 1-932415-24-6, CSREA Press, 2004 (PDF)
[22] Logue MW, Park J, Ni J, Cremer J, Segre A, Knosp B, Beck S, Vieland V., “Interactive visualization tools for genetic data,” ASHG 54th Annual Meeting, American Society of Human Genetics, 2004. pp. 528. (PDF)
[23] Juw Won Park, Jun Ni, James Cremer, Mark Logue, “Multidimensional Multivariate Visualization: Directed Visualization on Linkage Analysis, in International Conference on Bioinformatics and its Applications (ICBA’04), December 16-19, 2004, Nova Southeastern University, Fort Lauderdale, Florida, USA (PDF)
[24] Xiaoxu Han, Jun Ni, James Cremer, Xiaoqian Jiang, An Improved Protein-Folding Algorithm In the HP Model,” in International Conference on Bioinformatics and its Applications (ICBA’04), December 16-19, 2004, Nova Southeastern University, Fort Lauderdale, Florida, USA (PDF)
[25] Juw Won Park, Mark Logue, Jun Ni, James Cremer, Alberto Segre, Veronica Vieland, Scientific Visualization of Multidimensional Data: Genetic Likelihood Visualization, presented at High Performance Computing and Applications (HPCA2004), Shanghai, China, August 8-10, 2004; Lecture Note in Computer Science, Springer-Verlag Heidelberg, Germany, ISBN 3-540-25785-3, 2004 (PDF)
[26] Jun Ni, Ge Wang, Shaowen Wang, Tiange Zhuang, Weiqin Tong, Grid-enhanced International Digital Library (GridIDL) for Medical Imaging, submitted to High Performance Computing and Applications (HPCA2004), Shanghai, China, August 8-10, 2004, Lecture Note in Computer Science, Springer-Verlag Heidelberg, Germany, ISBN 3-540-25785-3, 2004 (PDF)
[27] Xiaoxu Han, Jun Ni, Zhihong Wang, Xiaoqian Jiang, “P-LZB, A Real-Time Parallel Local Z-Buffer Rendering Algorithm of Large Geometric Datasets,” submitted to High Performance Computing and Applications (HPCA2004), Shanghai, China, August 8-10, 2004, Lecture Note in Computer Science, Springer-Verlag Heidelberg, Germany, ISBN 3-540-25785-3, 2004 (PDF)
[28] Xiaoxu Han, James Cremer, Zhihong Wang, Jun Ni, “LZB, A Hybrid Algorithm of Local Ray-casting and Z-buffering for Large Geometric Datasets,” presented at the International Workshop on Visualization and Visual Steering (VVS'’04), in conjunction with GCC2004, Wu Han, China, Oct. 21-24, 2004 GCC2004, Lecture Note in Computer Science, Vol. 3252, pp. 720-727, Springer-Verlag Heidelberg, Germany, 2004 (PDF)
[29] Jun Ni, Chinglong Lin, Yongxiang Zhang, Tao He, Shaowen Wang, Body Knosp, “Parallelism of Lattice Boltzmann Method (LBM) for Lid-driven Cavity Flows,” High Performance Computing and Applications (HPCA2004), Shanghai, China, August 8-10, 2004, Lecture Note in Computer Science, Springer-Verlag Heidelberg, Germany, ISBN 3-540-25785-3, 2004 (PDF)
[31] Jun Ni, Ching-long Lin, Yongxiang Zhang, Tao He, Shaowen Wang, and Boyd M. Knosp “Performance Evaluation of a Parallel Lattice Boltzmann Method for Cavity Flows Using Cluster Computing,” The 2004 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'04), Las Vegas, Nevada, USA, June 21 - 24, 2004, pp. 10-16, Vol. I, ISBN: 1-932415-23-8, CSREA Press, 2004 (PDF)
2005
[32] Jun Ni, Tao He, Ge Wang, Shaowen Wang, and Boyd Knosp, “Scenario of Application Layers for Grid-enhanced International Digital Library in Medical Imaging,” The 2005 International Conference on Grid Computing and Applications (GCA'05), The 2005 World Congress in Applied Computing, Les Vegas, June, 2005, (GCA’05), ISBN 1-932415-57-2, CSREA Press, 2005 (PDF)
[33] Jun Ni, Tao He, Joe DeMaria, Shaowen Wang, and Boyd Knosp, Parallel Numerical Integration on a P2P/Grid Computing Environment,” The 2005 International Conference on Grid Computing and Applications (GCA'05), The 2005 World Congress in Applied Computing, Les Vegas, June, 2005, (GCA05), ISBN 1-932415-57-2, CSREA Press, 2005. (PDF)
[34] Shaowen Wang, Shaoping Xiao, and Jun Ni, “A Grid-based Bridging Domain Multiple-scale Method for Computational Nanotechnology,” presented at The First International Workshop On Computational Nano-science and Technology, 2005 (CNST’05), Lecture Note in Computer Science (LNCS), ISBN: 0302-9743, vol. 3516, pp. 326, Springer-Verlag Heidelberg, Germany, 2005 (PDF)
[35] Shaowen Wang, Marc P. Armstrong, Jun Ni, Yan Liu, GISolve: A Grid-based Problem Solving Environment for Computationally Intensive Geographic Information Analysis, IEEE Challenges of Large Applications in Distributed Environments (CLADE|05), July 24, 2005, Research Triangle Park, NC, USA. pp. 3-10, IEEE CS Press (PDF)
2006
[37] Nianmin Yao, Wenbin Yao, Shaobin Cai, and Jun Ni, A New Scheduling Algorithm for Servers, IMSCCS|06, J. Ni, J. Dongarra, Y. Zheng, G. Gu, W. Gentzsch, and H. Jin (eds.), IEEE Computer Society Press, Los Alamitos, California, USA, 2006, ISBN: 0-7695-2581-4. (PDF)
[38] Wenbin Yao, Nianmin Yao, Shaobin Cai, and Jun Ni, A Verification Environment for CMP Architecture Design, IMSCCS|06, J. Ni, J. Dongarra, Y. Zheng, G. Gu, W. Gentzsch, and H. Jin (eds.), IEEE Computer Society Press, Los Alamitos, California, USA, 2006, ISBN: 0-7695-2581-4. (PDF)
[39] Tao He, Jun Ni, and Ge Wang, A Heterogeneous Windows Cluster System for Medical Image Reconstruction,” in the Processing of the First International Multi-symposiums on Computer and Computational Sciences (IMSCCS|06), IEEE Computer Society Press, Los Alamitos, California, USA, ISBN 0-7695-2581-4, Vol. 1, pp. 410-415, 2006 (PDF)
[40] Tao He, Jun Ni, Junjun Deng, Hengyong Yu, and Ge Wang, Deployment of One-Sided Communication Technique for Parallel Computing in Katsevich CT Image Reconstruction, in the Processing of the First International Multi-symposiums on Computer and Computational Sciences (IMSCCS|06), IEEE Computer Society Press, Los Alamitos, California, USA, ISBN 0-7695-2581-4, Vol. 1, pp. 416-423, 2006 (PDF)
[41] Jun Ni, Junjun Deng, Hengyong Yu, Tao He, and Ge Wang, Analysis of Performance Evaluation of Parallel Katsevich Algorithm for 3-D CT Image Reconstruction, in the Processing of the First International Multi-symposiums on Computer and Computational Sciences (IMSCCS|06), IEEE Computer Society Press, Los Alamitos, California, USA, ISBN 0-7695-2581-4, Vol. 1, pp. 258-265, 2006 (PDF)
[42] Daming Xu and Jun Ni, A Numerical Approach of Direct-SIMPLE deduced Pressure Equations to Simulations of Transport Phenomena during Shaped Casting,in the Processing of the First International Multi-symposiums on Computer and Computational Sciences (IMSCCS|06), IEEE Computer Society Press, Los Alamitos, California, USA, ISBN 0-7695-2581-4, Vol. 2. (PDF)[43] Shaoping Xiao, Jun Ni, and Shaowen Wang, The Need of High-performance Computing in Computational Nano- Mechanics and Materials Science, in Proceeding of The Second Workshop of High Performance Computing for Nanotechnology, IEEE Computer Society Press, Los Alamitos, California, USA (in Press), 2006 (PDF)
[44] Jun Ni, Shaoping Xiao, and Shaowen Wang, Modeling and Simulations of Nanostructure Materials Processing,in Proceeding of the First Workshop of High Performance Computing for Nanotechnology, IEEE Computer Society Press, Los Alamitos, California, USA, 20062007
[45] Ransom Briggs, Shaowen Wang, Sukumar Ghosh, Eric Shook, Anand Padmanabhan, Shaoping Xiao, Jun Ni, A High-Throughput Virtual Organization Job Execution System (VOJES): Using the Open Science Grid for Reliability Analyses of Carbon Nanotubes, in Challenges of Large Applications in Distributed Environments (CLADE 2007), Monterey Bay, California, USA (PDF)
[46] Tianyou Wang, Jun Ni, Speedup Analysis for Parallel Implementation of Model of Response Accuracy and Response Time in Computerized Testing, ICCS 2007, Part III, Lecture Note in Computer Science, Vol. 4489, pp. 34-41, Springer-Verlag Berlin Heidelberg Publisher (2007) (PDF)
[47] Yanxia Wu, Guochang Gu, Kehui Wang, Jun Ni, Control Flow Checking Algorithm using Soft-based Intra-/Inter-block Assigned-Signature, Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 412-415. (PDF)
[48] Song Han, Guochang Gu, and Jun Ni, A Mobile Ad hoc Network with Mobile Satellite Communication Base Station, Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 512-516. (PDF)
[49] Xianbo Lang, Guochang Gu, Hongxun Yao, and Jun Ni, An Image Classification Method Based on a SK Sub-Vector Multi-Hierarchy Clustering Algorithm, Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, pp. 182-186. (PDF)
[50] Chen Ying, Guochang Gu, Tianyang Lv, Shaobin Huang, Jun Ni, The Linear Correlation Analysis of Numeric Attributes for Government Data, Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 521-524. (PDF)
[48] Chunna Cao, Wenbin Yao, Jun Ni,An Improved RED Algorithm Combines with Queue Length and Sending Rate Inspection, Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 421-424. (PDF)
[49] Linzhi Ning, Wenbin Yao, Jun Ni, Nianmin Yao, Fault-Tolerance CMP Architecture based on SMT Technology, Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 425-429. (PDF)
[52] Fei Gu, Hang Chen, Jun Ni, and Zhengge Huang, Protein Structural Class Prediction by Combining Conditional Probability with Information Content,Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 38-43. (PDF)
[54] Yongqiang Zhao, Minglu Li, and Jun Ni, Adaptive Nonlinear Diffusion Model for Vessel Image Enhancement,” Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 170-176. (PDF)
[55] Ying Chen, Jiadong Wang, Jun Ni, and Lu Zhang, Octree Data Structure in Image-based CAS for Noise Surgery in Otolaryngology, Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 123-128. (PDF)
[56] Tingjun Yang, Zhengge Huang, Xingsheng Lin, Jianjun Chen, and Jun Ni, A Parallel Algorithm for Binary-Tree-Based String Rewriting in L-system,Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 245-252. (PDF)
[57] Tao He, Jun Ni, Alberto M Segre, Shaowen Wang, and Boyd M. Knosp, SkipMard: A Multi-attribute Peer-to-Peer Resource Discovery Approach, Proceeding of the Second International Multi-symposiums of Computer and Computational Sciences (IMSCCS|07), University of Iowa, Iowa City, USA, Aug. 13-15, 2007, IEEE Computer Society Press, Los Alamitos, California, USA, Vol. 1, pp. 266-273. (PDF)
[58] Bo Qiang, Jun Ni, and Laurie Fajardo, Parallel Monte Carlo Algorithm for Simulation of Photon Migration inside Biological Tissues, RSNA|07, Chicago, USA, Scientific Paper, Nov. 25-30, 2007, SSQ16-02, pp. 596 (PDF)2008
[59] Haiwei Pan, Qilong Han, Guisheng Yin, Wei Zhang, Jianzhong Li, Jun Ni, A ROI-Based Mining Method with Medical Domain Knowledge Guidance, ICICSE|08, IEEE CS Press, 2008 (in press) (PDF)
[60] Yingjie Xia, Guanghua Song, Yao Zheng, Jun Ni, Mingzhe Zhu, A Small World Overlay P2P Transfer System with Role-based and Reputation-based Access Control Policies, ICICSE|08, IEEE CS Press, 2008 (in press) (PDF)[61] Jingping Chen, Haiwei Pan, Qilong Han, Linghua Chen, Jun Ni, “Credit Risk Assessment Model based on Domain Knowledge Constraint,” International Multi-symposiums of Computer and Computational Sciences (IMSCCS|08), IEEE Computer Science Publications, IEEE Computer Science Publications, ISBN 978-0-7695-3450-5, 2008, pp. 144-149
[62] Hualong Yu, Guochang Gu, Haibo Liu, Jing Shen, Changming Zhu, Jun Ni, “Incremental Tumor Diagnosis Algorithm using New Unlabeled Microarray,” International Multi-symposiums of Computer and Computational Sciences (IMSCCS|08), IEEE Computer Science Publications, IEEE Computer Science Publications, ISBN 978-0-7695-3450-5, 2008, pp. 45-50
[63] Wenbin Yao, Linzhi Ning, Jun Ni, Shaobin Cai, “A Fault-Tolerant Trusted Computing Platform,” International Multi-symposiums of Computer and Computational Sciences (IMSCCS|08), IEEE Computer Science Publications, IEEE Computer Science Publications, ISBN 978-0-7695-3450-5, 2008
[64] Guo-Zheng Li, Hao-Hua Meng, Jun Ni, “Embedded Gene Selection for Imbalanced Microarray Data Analysis,” International Multi-symposiums of Computer and Computational Sciences (IMSCCS|08), IEEE Computer Science Publications, IEEE Computer Science Publications, ISBN 978-0-7695-3450-5, 2008, pp. 17-24.
[65] Haomin Zhan, Guisheng Yin, Changsong Sun, Linshan Shen, Jun Ni, “Process Algebra-Based Description for the Software Requirement,” International Multi-symposiums of Computer and Computational Sciences (IMSCCS|08), IEEE Computer Science Publications, IEEE Computer Science Publications, ISBN 978-0-7695-3450-5, 2008 , pp. 184-189.
[66] Zhe Zhang, Min Song, Daxin Liu, Zhengxian Wei, Hongbin Wang, Jun Ni, “Data-Structure-Model for Data Integration in Distributed Systems,” IEEE Computer Science Publications, IEEE Computer Science Publications, ISBN 978-0-7695-3450-5, 2008, pp. 194-199.2009
[67] Jun Ni and Simon Kao, “How Do The Shape and Orientation of A Tumor Mass Affect the Accuracy Estimation Its Size Using RECIST?, Radiology Society of North American, 2009, Nov.
[68] Songzhu Xia, Su Wu1, Jun Ni, “Multi-Path Routing Algorithm with Energy-Aware based on Ant Colony System in Wireless Sensor Networks,” IEEE CS Press, ICICSE 2009 (accepted)
[69] Min Song, Zhe Zhang, Guisheng Yin, Hongbin Wang, Jun Ni, “Information System Integration-Oriented Publish/Subscribe Driven Matching Algorithm,” IEEE CS Press, ICICSE 2009 (accepted)
[70] Songzhu Xia, Jianpei Zhang, Jing Yang, Jun Ni, “A Content-based Self-feedback E-Government Network Security Model,” IEEE CS Press, ICICSE 2009 (accepted)
[71] Xiaolei Tan, Haiwei Pan, Qilong Han, Jun Ni, Domain Knowledge-Driven Association Pattern Mining Algorithm on Medical Images IEEE CS Press, ICICSE 2009 (accepted)
Editorial Books (33 books)
[1] Hamid R. Arabnia (Editor) and G. A. Gravvanis, Xiangjian He, Tom Hintz, Kazuki Joe, Seon Ho Kim, Dan Liu, Mario Nakamori, Jun Ni, Gilbert Young (Associate Editors), Proceedings of The International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’04), Vol. III, ISBN: 1-932415-25-4, CSREA Press, 2004
[2] Hamid R. Arabnia (Editor) and G. A. Gravvanis, Xiangjian He, Tom Hintz, Kazuki Joe, Seon Ho Kim, Dan Liu, Mario Nakamori, Jun Ni, Gilbert Young (Associate Editors), Proceedings of The International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA’04), Vol. I, ISBN: 1-932415-23-8, CSREA Press, 2004
[3] Minglu Li, Xian-He Sun, Qianni Deng, and Jun Ni (Editors), Grid and Cooperative Computing, Part II: Second International Workshop (GCC’03), Shanghai, China, December 7-10, 2003, Lecture Notes in Computer Science, Volume 3033, ISBN: 3-540-21988-9, Springer-Verlag Heidelberg, Germany, 2004
[4] Minglu Li, Xian-He Sun, Qianni Deng, and Jun Ni (Editors.), Grid and Cooperative Computing, Part I: Second International Workshop (GCC’03), Shanghai, China, December 7-10, 2003, Lecture Notes in Computer Science, Volume 3032, ISBN: 3-540-
[5] Hamid R. Arabnia and Jun Ni (Editors) and G. A. Gravvanis, Xiangjian He, Tom Hntz, Kazuki Joe, Seon Ho Kim, Dan Liu, Mario Nakamori, Gilbert Young (Associate Editors), Proceedings of The International Conference on Parallel and Distributed processing Techniques and Applications (PDTA’04), Vol. II, ISBN: 1-932415-24-6, CSREA Press, 2004, 21988-9, Springer-Verlag Heidelberg, Germany, 2004
[6] Hamid R. Arabnia and Rose Joshua (Editors), and Victor Clincy, Olaf Droegehorn, Joan Lu, Yungsong Mun, and Jun Ni (Associate Editors), Proceeding of the International Conference on Internet Computing (ICOMP’05), ISBN: 1-932415-69-6, CSREA Press, 2005
[7] Hamid R. Arabnia and Jun Ni (Editors), and Shaowen Wang (Associate Editor), Proceeding of the 2005 International Conference on Grid Computing and Applications (GCA’05), ISBN 1-932415-57-2, CSREA Press, 2005
[8] Hengtao Shen, Jinbao Li, Minglu Li, Jun Ni, Wei Wang (Eds.): Advanced Web and Network Technologies, and Applications, APWeb 2006 International Workshops: XRA, IWSN, MEGA, and ICSE, Harbin, China, January 16-18, 2006, Proceedings, Lecture Notes in Computer Science 3842 Springer 2006, ISBN 3-540-31158-0
[9] Hamid R. Arabnia (Editor), Jun Ni, Laurence T. Yang(Associate Editor), Proceedings of the International Conference on Pervasive Systems and Computing PSC'06, June 26-29, 2006, Las Vegas, Nevada, CSREA Press, 2006 ISBN: 1-60132-018-3
[10] Hamid R. Arabnia (Editor), Jun Ni, Shivakumar Sastry, Laurence T. Yang (Associate Editor), Proceedings of the International Conference on Embedded Systems and Applications ESA'06 , June 26-29, 2006, Las Vegas, Nevada, CSREA Press, 2006 ISBN: 1-60132-017-5
[11] Hamid R. Arabnia (Editor), Ashu M.G. Solo, Jun Ni (Associate Editor), Proceedings of the International Conference on Semantic Web and Web Services SWWS'06, June 26-29, 2006, Las Vegas, Nevada, CSREA Press, ISBN: 1-60132-016-7
[12] Hamid R. Arabnia (Editor), John R. Boisseau, George A. Gravvanis, Jun Ni (Associate Editor), Proceedings of the International Conference on Grid Computing and Applications GCA'06, June 26-29, 2006, Las Vegas, Nevada, CSREA Press, 2006 ISBN: 1-60132-014-0
[13] Hamid R. Arabnia (Editor), Jun Ni (Associate Editor), Computing in Nanotechnology CNAN'06, CSREA Press, 2006
[14] Hamid R. Arabnia (Editor), Kamal K. Mehta, Jun Ni, Himanshu Thapliyal (Associate Editor), Proceedings of the International Conference on Computer Design CDES'06, June 26-29, 2006, Las Vegas, Nevada, CSREA Press, 2006 ISBN: 1-60132-009-4
[15] Jun Ni, Jack Dongarra, Yao Zheng, Guochang Gu, Gentzsch Wofgang, and Hai Jin, First International Multi-Symposium of Computer and Computational Sciences (IMSCCS|06), Vol. 1 and Vol. 2, IEEE/Computer Society Press, ISBN: 0-7695-2581-4, 2006
[16] Jun Ni, Jack Dongarra, Shaoping Xiao, Deepak Srivastava, and Meyya Meyyappan (eds.), Advanced Computations in Nanotechnology, IEEE Proceeding of the First International Workshop of High Performance Computing in Nanotechnology (HPCNano05), IEEE/Computer Society Press, 2008 (in press)
[17] Jun Ni, Thom Dunning, Jack Dongarra, and Andrew Canning (eds.), Advanced Computations in Nanotechnology, IEEE Proceeding of the Second International Workshop of High Performance Computing in Nanotechnology (HPCNano06), IEEE/Computer Society Press, 2008 (in press)
[18] Jun Ni, James Cremer, Ed. Seidel, Jack Dongarra, Tom Casavant, Shaoping Huang, Guochang Gu, Proceeding of the Second International Multi-Symposium of Computer and Computational Sciences (IMSCCS|07), IEEE/Computer Society Press, ISBN 0-7695-3039-7, ISBN 978-0-7695-3039-0, 2007
[19] Hamid R. Arania (Editor), Nikilaos G. Bourbakis, Halil Ceylan, Yuehui Chen, George A. Demetriou, David Dodds, Laura L. Elnitski, Okan K. Ersoy, David de Fuente, Joydeep Ghost, Petter M. LaMonica, Guo-Zheng Li, Raymond A. Liuzzi, Jun Ni, Andrzej Niemierko, Jose A. Olivas, Bill Rand, Gene Simmons, Ashu M. G. Solo, Andrew Sung, Sule Tildirim, Yangqiang Zhang, Mattias Dehmer, Frank Emmert-Streib (Associate Editor), Proceeding of 2007 International Conference on Artificial Intelligence, Vol. I, Worldcomp’07, CSREA Press, ISBN: 1-60132-0230X, 1-60132-024-8 (1-60132-025-6)
[20] Hamid R. Arania (Editor), Nikilaos G. Bourbakis, Halil Ceylan, Yuehui Chen, George A. Demetriou, David Dodds, Laura L. Elnitski, Okan K. Ersoy, David de Fuente, Joydeep Ghost, Petter M. LaMonica, Guo-Zheng Li, Raymond A. Liuzzi, Jun Ni, Andrzej Niemierko, Jose A. Olivas, Bill Rand, Gene Simmons, Ashu M. G. Solo, Andrew Sung, Sule Tildirim, Yangqiang Zhang, Mattias Dehmer, Frank Emmert-Streib (Associate Editor), Proceeding of 2007 International Conference on Artificial Intelligence, Vol. II, Worldcomp’07, CSREA Press, ISBN: 1-60132-0230X, 1-60132-024-8 (1-60132-025-6)
[21] Hamid R. Arabnia, Victor A. Clincy, Joan Lu, Jan Smid (Editor), Azita Bahrami, Olaf Droegehorn, George A. Gravvanis, Sandra Haseloff, Jun Ni, Ashu M. G. Solo, Salim Zabir (Associate Editor), Proceeding of 2007 International Conference on Internet Computing, Worldcomp’07, CSREA Press, ISBN: 1-60132-044-2
[22] Hamid R. Arabnia, Jack Yang, Mary Qu Yang (Editor), Jun Ni, Ashu M.G. Solo, Mathias Dehmer, Frank Emmert-Streib (Associate Editor), Proceeding of 2007 International Conference on Genetic and Evolutionary Methods, Worldcomp’07, CSREA Press, ISBN: 1-60132-0388
[23] Hamid R. Arabnia, Laurence T. Yang (Editor), George A Gravvanis, Jun Ni, Ashu M. Solo (Associate Editor), Proceeding of 2007 International Conference on Multimedia Systems and Applications, Worldcomp’07, CSREA Press, ISBN: 1-60132-0477
[24] Hamid R. Arabnia, Jack Yang, mary Yang (Editor), George A. Gravvanis, Jun Ni, Ashu M. Solo, Mathias Dehmer, Frank Emmert-Streib (Associate Editor), Proceeding of 2007 International Conference on Scientific Computing, Worldcomp’07, CSREA Press, ISBN: 1-60132-037X
[25] Hamid R. Arabnia (Editor), George A. Gravvanis, Jun Ni, Ashu M. G. Solo, Salim Zabir (Associate Editor), Proceeding of 2007 International Conference on Semantic Web and Web Servcies, Worldcomp’07, CSREA Press, ISBN: 1-60132-0454
[26] Hamid R. Arabnia, Azita Bahrami (Editor), Jun Ni, Ashu M. G. Solo (Associate Editor), Proceeding of 2007 International Conference on E-Learning, E-Business, Enterprise Information Systems, and E-Government, Worldcomp’07, CSREA Press, ISBN: 1-60132-0515
[27] Hamid R. Arabnia, P. L. Zhou (Editor), mark Burgin, George A. Gravvais, Jun Ni, Ashu M. G. Solo (Associate Editor), Proceeding of 2007 International Conference on Foundations of Computer Sceince, Worldcomp’07, CSREA Press, ISBN: 1-60132-0230X, 1-60132-0493
[28] Hamid R. Arabnia, Ray R. Hashemi (Editor), Shahin Keynoush, Jun Ni, Cyrus R. Sabri, Ashu M. G. Solo (Associate Editor), Proceeding of 2007 International Conference on Information & Knowledge Engineering, Worldcomp’07, CSREA Press, ISBN: 1-60132-0507
[29] Hamid R. Arabnia and Laurence T. Yang (Editor), Jun Ni, Ashu M. G. Solo (Associate Editor), Proceeding of 2007 International Conference on Embedded Systems & Applications, Worldcomp’07, CSREA Press, ISBN: 1-60132-0523
[30] Hamid R. Arania, Mary Qu Yang, Jack Yang (Editor), Philip E. Bourne, Yuehui Chen, Jun Dong, A. Keith Dunker, Laura L. Elnitski, Steve Horvath, Yufang Jin, Guo-Zheng Li, Yunlong Liu, Zuojie Luo, Jun Ni, Andrzej Niemierko, Ashu M. G. Solo, My T. Thai, Yufeng Wang, Yangqiang Zhang, Mathias, Mattias Dehmer, Frank Emmert-Streib (Associate Editor), Proceeding of 2007 International Conference on Bioinformatics & Computational Biology, Vol. I, II, Worldcomp’07, CSREA Press, ISBN: 1-60132-0418[31] Jun Ni, Hai Jin, Shaobin Huang, Joe Demaria, Proceeding of Third International Conference on Internet Computing in Science and Engineering, IEEE Computer Science Publications, ISBN 978-0-7695-3112-0, 2008
[32] Jun Ni, Lu Zhang, Ying Chen, Tiange Zhuang, Huanye Shen, Yong Zhang, Shaobin Huang, Guochang Gu, JoeDemaria, Third International Multi- Symposiums on Computer and Computational Sciences (IMSCCS|08)，IEEE Computer Science Publications, I IEEE Computer Science Publications, ISBN 978-0-7695-3450-5, 2008
[33] Jun Ni, Shaobin Huang, Judy Brown, Steve Cunning, The Fourth Proceeding of Third International Conference on Internet Computing in Science and Engineering, IEEE Computer Science Publications, 2009
Books and Book Chapters
[1] Shaoping Xiao, Jun Ni and Shaowen Wang, “Cyberinfrastructure-enabled HPC architecture for multi-scale modeling and simulations in nanostructure materials science,” (invited chapter), Nova Science Publishers, Inc. (2008) (in press)
[2] Jun Ni, “Grid Computing for Medical Imaging," Taylor & Francis (2008)
[3] Jun Ni, “High Performance Computing for Nanotechnology,” Springer-Verlag Heidelberg, Germany (2008)
[4] Jun Ni, “Cyberinfrastructure and Grid Computing for Radiology Informatics,” IGI Global (2008)
Published Application Software (3)
[1] Jun Ni, “Web Enhanced Scientific Computing: Science and Engineering online Solution Libraries,” presented at CIC Tech Forum, NCSA, 1998
[2] Jun Ni, Lili Huang, Ge Wang, and S. Kao, VoluMeasureTM: A Portable Java program for Stereological Volume Measurement,” Education Exhibition, Radiological Society of North American Scientific Assembly and Annual Meeting, Chicago, Nov. 2002
[3] Instructional software, Stereotactic Atlas of the Macaca Mulatta Thalamus and Adjacent Basal Ganglia Nuclei,” I. A. Ilinsky, K. K. Ilinsky, and Boyd Knosp, Kluwer Academic/Plenum Publishers, 2002
Ph.D. Thesis Title: Development of a Two-Phase Model of Transport Phenomena during Equiaxed Solidification, The University of Iowa, Iowa City, USA, 1991.
M.S. Thesis Title: Reversing Hydraulic Transmission System in Marine Engineering, Shanghai Jiao Tong University, Shanghai, China, 1984.
BS Thesis Title: Total Design of Escort against Submarine, Harbin Shipbuilding Engineering Institute (now Harbin Engineering University), China, 1982.